Whole-genome sequencing of pathogens from a hospital setting - SRA

SRX26426199: Whole-genome sequencing of pathogens from a hospital setting
1 ILLUMINA (Illumina NovaSeq 6000) run: 1.7M spots, 920.8M bases, 470.8Mb downloads

Design: Illumina library prep using Nextera DNA UD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

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The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN44347811 • SRS22945585 • All experiments • All runs

Organism: Clostridioides difficile

Library:

Name: BWH-CDIFF-0000-0098-0421

Instrument: Illumina NovaSeq 6000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 1.7M spots, 920.8M bases, 470.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR31040930	1,704,997	920.8M	470.8Mb	2024-10-18

ID:: 35688492

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Sequence Read Archive

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